publications
publications by categories in reversed chronological order. generated by jekyll-scholar.
2025
- Medshapenet–a large-scale dataset of 3d medical shapes for computer visionBiomedical Engineering/Biomedizinische Technik, 2025
- Automated quantitative analysis of peri-articular bone microarchitecture in HR-pQCT knee imagesComputer Methods and Programs in Biomedicine, 2025
- SMART MRS: A Simulated MEGA-PRESS ARTifacts toolbox for GABA-edited MRSMagnetic Resonance in Medicine, 2025
- Brain connectomes in youth at risk for serious mental illness: a longitudinal perspectiveBrain Imaging and Behavior, 2025
- Development of a machine learning tool to predict deep inspiration breath hold requirement for locoregional right-sided breast radiation therapy patientsBiomedical Physics & Engineering Express, 2025
- Cardiac Baroreflex Is Preserved After the Recovery From COVID-19 Men and WomenThe Journal of Clinical Hypertension, 2025
- A visual journey through medium vessel occlusion strokes: From diagnosis to treatmentInterventional Neuroradiology, 2025
- Generalize or Specialize? The Effect of Coil Combining in Deep Learning Based MR Image ReconstructionIn 2025 IEEE 22nd International Symposium on Biomedical Imaging (ISBI), 2025
- Accelerating Water Removal in MRSI Using Domain Knowledge-Based Deep LearningIn 2025 IEEE 22nd International Symposium on Biomedical Imaging (ISBI), 2025
- Quantifying White Matter Hyperintensities: Predicting Periventricular Fazekas Scores with Uncertainty EstimationIn 2025 IEEE 22nd International Symposium on Biomedical Imaging (ISBI), 2025
- Enhancing and accelerating brain MRI through deep learning reconstruction using prior subject-specific imagingMagnetic Resonance Imaging, 2025
- Improving skull-stripping for infant MRI via weakly supervised domain adaptation using adversarial learningComputers in Biology and Medicine, 2025
- GABA-Edited Magnetic Resonance Spectroscopy Deep Learning Quality Assessment FrameworkbioRxiv, 2025
- Investigating Voxel-Level Brain Age Prediction as a Pretext Task for Brain MRI SegmentationIn International Conference on Medical Image Computing and Computer-Assisted Intervention, 2025
- CCNeXt: An effective self-supervised stereo depth estimation approachComputer Vision and Image Understanding, 2025
- Magnetic Resonance ImageIn Reconstruction and Imaging Motion Estimation, and Graphs in Biomedical Image Analysis: First International Workshop, RIME 2025, and 7th International Workshop, GRAIL 2025, Daejeon, South Korea, September 27, 2025, Proceedings, 2025
- Evaluating Deep Learning Based Domain Generalization for Motion MitigationIn Reconstruction and Imaging Motion Estimation, and Graphs in Biomedical Image Analysis: First International Workshop, RIME 2025, and 7th International Workshop, GRAIL 2025, Daejeon, South Korea, September 27, 2025, Proceedings, 2025
- Robustness Evaluation of Multi-visit Magnetic Resonance Image ReconstructionIn International Workshop on Reconstruction and Imaging Motion Estimation, 2025
- Evaluating Deep Learning Based Domain Generalization for Motion Mitigation in Multi-center Brain MRIIn International Workshop on Reconstruction and Imaging Motion Estimation, 2025
- SCOPE: Label Extraction of Stroke Diagnosis from Unstructured Medical Reports Using Retrieval-Augmented GenerationIn International Workshop on Emerging LLM/LMM Applications in Medical Imaging, 2025
- The Role of Artificial Intelligence in Acute Stroke Imaging: Current Status and Future DirectionsIn Seminars in Interventional Radiology, 2025
2024
- A voxel-level approach to brain age prediction: A method to assess regional brain agingMachine Learning for Biomedical Imaging, 2024
- An empirical analysis of structural neuroimaging profiles in a staging model of depressionJournal of Affective Disorders, 2024
- Frequency and phase correction of GABA-edited magnetic resonance spectroscopy using complex-valued convolutional neural networksMagnetic Resonance Imaging, 2024
- Integration of Swin UNETR and statistical shape modeling for a semi-automated segmentation of the knee and biomechanical modeling of articular cartilageScientific Reports, 2024
- Unsupervised domain adaptation of MRI skull-stripping trained on adult data to newbornsIn Proceedings of the IEEE/CVF Winter Conference on Applications of Computer Vision, 2024
- Unsupervised domain adaptation of brain MRI skull stripping trained on adult data to newborns: Combining synthetic data with domain invariant featuresIn Medical Imaging with Deep Learning, 2024
- Advancing Healthcare Fairness: Analysis of Sex Differences in the Brain using Deep Learning2024
- Hyperaemia during dynamic handgrip exercise is preserved in healthy young subjects after recovery from COVID-19Experimental Physiology, 2024
- Results of the 2023 ISBI challenge to reduce GABA-edited MRS acquisition timeMagnetic Resonance Materials in Physics, Biology and Medicine, 2024
- Effect of MR head coil geometry on deep-learning-based MR image reconstructionMagnetic Resonance in Medicine, 2024
- Automated Classification of Choroidal Nevi using Data Augmentation and a Patch-Based Deep Learning Approach with Fundus ImagesInvestigative Ophthalmology & Visual Science, 2024
- Reza Kakavand, Mehrdad Palizi 2, Peyman Tahghighi, Reza Ahmadi, Neha GianchandaniScientific Reports, 2024
- Spectro-ViT: A vision transformer model for GABA-edited MEGA-PRESS reconstruction using spectrogramsMagnetic Resonance Imaging, 2024
- Trustworthy and responsible ai for human-centric autonomous decision-making systemsarXiv preprint arXiv:2408.15550, 2024
- Sex differences in brain MRI using deep learning toward fairer healthcare outcomesFrontiers in Computational Neuroscience, 2024
- Enhancing new multiple sclerosis lesion segmentation via self-supervised pre-training and synthetic lesion integrationIn International Conference on Medical Image Computing and Computer-Assisted Intervention, 2024
- Enhancing Choroidal Nevi Segmentation in Fundus Images Using YOLOIn 2024 IEEE International Conference on Information Reuse and Integration for Data Science (IRI), 2024
- Fully automatic segmentation of brain lacunas resulting from resective surgery using a 3D deep learning modelmedRxiv, 2024
- High-Risk Clinical Target Volume Auto-Contouring on MRI for Cervical Cancer Brachytherapy Using 3D U-Net Transfer LearningIn MEDICAL PHYSICS, 2024
- UNET and UNETR Based Frameworks for Predicting the Short-Term Spatiotemporal Demand of E-Scooter Sharing ServicesIn 2024 IEEE 27th International Conference on Intelligent Transportation Systems (ITSC), 2024
2023
- Harmonization of multi-scanner in vivo magnetic resonance spectroscopy: ENIGMA consortium task group considerationsFrontiers in Neurology, 2023
- Towards understanding quality challenges of the federated learning for neural networks: a first look from the lens of robustnessEmpirical Software Engineering, 2023
- Automated segmentation of knee MR images for biomechanical modeling of the knee jointCMBES Proceedings, 2023
- Explaining eye diseases detected by machine learning using shap: A case study of diabetic retinopathy and choroidal nevusSN Computer Science, 2023
- Reframing the brain age prediction problem to a more interpretable and quantitative approacharXiv preprint arXiv:2308.12416, 2023
- Advancing GABA-edited MRS Research through a Reconstruction ChallengebioRxiv, 2023
- Studying the effects of sex-related differences on brain age prediction using brain mr imagingIn Workshop on Clinical Image-Based Procedures, 2023
- A multitask deep learning model for voxel-level brain age estimationIn International Workshop on Machine Learning in Medical Imaging, 2023
- An Investigation of Different Deep Learning Pipelines for GABA-Edited MRS ReconstructionIn International Workshop on Machine Learning in Medical Imaging, 2023
- Spectro-ViT: A Vision Transformer Model for GABA-edited MRS Reconstruction Using SpectrogramsarXiv preprint arXiv:2311.15386, 2023
- Choroidal nevi classification in fundus images using a patch-based deep learning approachIn 2023 IEEE EMBS Special Topic Conference on Data Science and Engineering in Healthcare, Medicine and Biology, 2023
2022
- Childhood trauma and amygdala nuclei volumes in youth at risk for mental illnessPsychological Medicine, 2022
- Extraction of a vascular function for a fully automated dynamic contrast-enhanced magnetic resonance brain image processing pipelineMagnetic Resonance in Medicine, 2022
- A survey on RGB-D datasetsComputer Vision and Image Understanding, 2022
- Cerebello-limbic functional connectivity patterns in youth at clinical high risk for psychosisSchizophrenia Research, 2022
- Leveraging Multi-Visit Information for Magnetic Resonance Image Reconstruction: Pilot Study on a Cohort of Glioblastoma SubjectsIn 2022 IEEE 19th International Symposium on Biomedical Imaging (ISBI), 2022
- Multi-coil MRI reconstruction challenge—assessing brain MRI reconstruction models and their generalizability to varying coil configurationsFrontiers in neuroscience, 2022
- A domain adaptation benchmark for T1-weighted brain magnetic resonance image segmentationFrontiers in Neuroinformatics, 2022
- Using shap analysis to detect areas contributing to diabetic retinopathy detectionIn 2022 IEEE 23rd International Conference on Information Reuse and Integration for Data Science (IRI), 2022
- COVID-19 vaccine infodemiology using unsupervised natural language processingIn 2022 IEEE 23rd International Conference on Information Reuse and Integration for Data Science (IRI), 2022
- Improving fast MRI reconstructions with pretext learning in low-data regimeIn 2022 44th Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC), 2022
- Brain connectomes in youth at risk for serious mental illness: an exploratory analysisBMC psychiatry, 2022
- Towards Understanding Quality Challenges of the Federated Learning for Neural Networks: A First Look from the Lens of RobustnessarXiv e-prints, 2022
- Towards understanding quality challenges of the federated learning: A first look from the lens of robustnessarXiv preprint arXiv:2201.01409, 2022
2021
- Deep learning for diagnosis and classification of faults in industrial rotating machineryComputers & Industrial Engineering, 2021
- Less is More: A Self-supervised Learning approach to Multi-channel MR Image Reconstruction2021
2020
- Hippocampal tail volume as a predictive biomarker of antidepressant treatment outcomes in patients with major depressive disorder: a CAN-BIND reportNeuropsychopharmacology, 2020
- Dual-domain cascade of U-nets for multi-channel magnetic resonance image reconstructionMagnetic resonance imaging, 2020
- Aberrant limbic brain structures in young individuals at risk for mental illnessPsychiatry and Clinical Neurosciences, 2020
- Low-dose ct enhancement network with a perceptual loss function in the spatial frequency and image domainsarXiv preprint arXiv:2005.11852, 2020
- Enhanced deep-learning-based magnetic resonance image reconstruction by leveraging prior subject-specific brain imaging: Proof-of-concept using a cohort of presumed normal subjectsIEEE Journal of Selected Topics in Signal Processing, 2020
- BEST IN PHYSICS (IMAGING): Comparison of Loss Functions in Dual-Domain Convolutional Neural Networks for Low-Dose CT EnhancementIn MEDICAL PHYSICS, 2020
- 統合失調症患者の血漿ドパミン代謝物レベルはミスマッチ陰性電位と相関するPsychiatry and Clinical Neurosciences, 2020
2019
- A hybrid, dual domain, cascade of convolutional neural networks for magnetic resonance image reconstructionIn International conference on medical imaging with deep learning, 2019
- Reliability of computer-aided diagnosis tools with multi-center MR datasets: impact of training protocolIn Medical Imaging 2019: Computer-Aided Diagnosis, 2019
- Improving estimates of brain metabolite concentrations in MR spectroscopic imaging (MRSI) through MRI contentIn Medical Imaging 2019: Biomedical Applications in Molecular, Structural, and Functional Imaging, 2019
- Testing a deep convolutional neural network for automated hippocampus segmentation in a longitudinal sample of healthy participantsNeuroImage, 2019
- F113. Hippocampal Subfield-Specific Sex Differences in Patients With Major Depressive DisorderBiological Psychiatry, 2019
- Subfield-Specific Hippocampal Volumes in Youth at Risk for Mental IllnessIn Biological Psychiatry, 2019
- Quality Control Framework for Large MR Datasets: Automated Approaches to Outlier DetectionIn XXVI Brazilian Congress on Biomedical Engineering: CBEB 2018, Armação de Buzios, RJ, Brazil, 21-25 October 2018 (Vol. 2), 2019
- Investigation of Fully Connected Neural Networks for Reconstruction of MR ImagesIn XXVI Brazilian Congress on Biomedical Engineering: CBEB 2018, Armação de Buzios, RJ, Brazil, 21-25 October 2018 (Vol. 2), 2019
- Automatic identification of atherosclerosis subjects in a heterogeneous MR brain imaging data setMagnetic resonance imaging, 2019
- Convolutional neural networks for skull-stripping in brain MR imaging using silver standard masksArtificial intelligence in medicine, 2019
- Brain Extraction Network Trained with" Silver Standard" Data and Fine-Tuned with Manual Annotation for Improved SegmentationIn 2019 32nd SIBGRAPI Conference on Graphics, Patterns and Images (SIBGRAPI), 2019
- Restoration of lossy JPEG-compressed brain MR images using cross-domain neural networksIEEE Signal Processing Letters, 2019
- W-net: A Hybrid Compressed Sensing MR Reconstruction ModelIn , 2019
2018
- Method for multiclass classification in open-set scenarios and uses thereofNov 2018US Patent 10,133,988
- An open, multi-vendor, multi-field-strength brain MR dataset and analysis of publicly available skull stripping methods agreementNeuroImage, Nov 2018
- Silver standard masks for data augmentation applied to deep-learning-based skull-strippingIn 2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018), Nov 2018
- Reliability of using single specialist annotation for designing and evaluating automatic segmentation methods: a skull stripping case studyIn 2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018), Nov 2018
- Normal brain aging: Prediction of age, sex and white matter hyperintensities using a mr image-based machine learning techniqueIn International Conference Image Analysis and Recognition, Nov 2018
- New frontiers in spectral-spatial hyperspectral image classification: The latest advances based on mathematical morphology, Markov random fields, segmentation, sparse representation, and deep learningIEEE geoscience and remote sensing magazine, Nov 2018
- Multicenter imaging studies: automated approach to evaluating data variability and the role of outliersIn 2018 31st SIBGRAPI Conference on Graphics, Patterns and Images (SIBGRAPI), Nov 2018
- A Hybrid Frequency-domain/Image-domain Deep Network for Magnetic Resonance Image ReconstructionarXiv, Nov 2018
- Common Carotid Artery Lumen Automatic Segmentation from Cine Fast Spin Echo Magnetic Resonance ImagingIn Sipaim–Miccai Biomedical Workshop, Nov 2018
- Online Orthogonal Regression Based on a Regularized Squared LossIn 2018 17th IEEE International Conference on Machine Learning and Applications (ICMLA), Nov 2018
2017
- iamxt: Max-tree toolbox for image processing and analysisSoftwareX, Nov 2017
- Nearest neighbors distance ratio open-set classifierMachine Learning, Nov 2017
- Max-tree: theory, algorithms and applications= Árvore máxima: teoria, algoritmos e aplicações[sn], Nov 2017
- Transfer learning using convolutional neural networks for face anti-spoofingIn International Conference on Image Analysis and Recognition, Nov 2017
- Semi-automatic common carotid lumen segmentation on dynamic mr imagesInternational journal of stroke, Nov 2017
- WMH segmentation challenge: a texture-based classification approachIn International MICCAI Brainlesion Workshop, Nov 2017
- Common Carotid Artery Lumen Segmentation from Cardiac Cycle-resolved Cine Fast Spin Echo Magnetic Resonance ImagingIn 2017 30th SIBGRAPI Conference on Graphics, Patterns and Images (SIBGRAPI), Nov 2017
2016
- Extinction profiles: A novel approach for the analysis of remote sensing dataIn 2016 IEEE International Geoscience and Remote Sensing Symposium (IGARSS), Nov 2016
- Extinction profiles for the classification of remote sensing dataIEEE Transactions on Geoscience and Remote Sensing, Nov 2016
- Hyperspectral data classification using extended extinction profilesIEEE Geoscience and Remote Sensing Letters, Nov 2016
- An overview of max-tree principles, algorithms and applicationsIn 2016 29th SIBGRAPI conference on graphics, patterns and images tutorials (SIBGRAPI-T), Nov 2016
- Extended extinction profile for the classification of hyperspectral imagesIn 2016 8th Workshop on Hyperspectral Image and Signal Processing: Evolution in Remote Sensing (WHISPERS), Nov 2016
- A max-tree simplification proposal and applications for the interactive max-tree visualization toolIn 2016 29th SIBGRAPI Conference on Graphics, Patterns and Images (SIBGRAPI), Nov 2016
- Olfactory Impairment Is Associate with Cognitive Dysfunction and Regional Brain Atrophy in Systemic SclerosisIn ARTHRITIS & RHEUMATOLOGY, Nov 2016
- Hands-on Morphological Processing using the Max-tree Data StructureNov 2016
- Sistema de produção de leite, implantado na Estação Experimental de Bananal do Norte-Cachoeiro de Itapemirim (ES).Nov 2016
2015
- Web-based platform for collaborative medical imaging researchIn Medical Imaging 2015: PACS and Imaging Informatics: Next Generation and Innovations, Nov 2015
- A comparison between extinction filters and attribute filtersIn International Symposium on Mathematical Morphology and Its Applications to Signal and Image Processing, Nov 2015
- Interactive max-tree visualization tool for image processing and analysisNov 2015
- An array-based node-oriented max-tree representationIn 2015 IEEE International Conference on Image Processing, Nov 2015
2014
- A comparison between k-Optimum Path Forest and k-Nearest Neighbors supervised classifiersPattern recognition letters, Nov 2014
- Maximal max-tree simplificationIn 2014 22nd International conference on pattern recognition, Nov 2014
- Maximal max-tree simplification= Simplificação maximal da árvore máxima[sn], Nov 2014
2012
- A comparison between optimum-path forest and k-nearest neighbors classifiersIn 2012 25th SIBGRAPI Conference on Graphics, Patterns and Images, Nov 2012
2009
- Design of thin film filters using differential evolution optimization techniqueIn 2009 SBMO/IEEE MTT-S International Microwave and Optoelectronics Conference (IMOC), Nov 2009
- The use of molecular techniques for diagnosis of pathogens in seeds.Nov 2009
2001
- Control of zucchini squash powdery mildew (Sphaerotheca fuliginea) with water extracts from organic matter.Nov 2001
1980
- [Dairy cattle breeding in molasses grass pasture of the" Zona da Mata", Minas Gerais [Melinis minutiflora; Brazil]]Circular Tecnica-Centro Nacional de Pesquisa de Gado de Leite (Brazil), Nov 1980
- Recria de animais leiteiros em pastagem de capim-gordura da Zona da Mata de Minas Gerais.Nov 1980
- Towards a fully Automated Time-context Sensitive Convolutional Neural Network for Common Carotid Artery Lumen Segmentation on Dynamic MRINov 1980
- W-net: A Dual-domain Deep Learning Model for Image ReconstructionNov 1980
- Can brain MRI skull-stripping methods be further improved using manual segmentation as ground-truth for validation?Nov 1980
- 2D Single Plane Big Data Convolutional Neural Network for Skull-StrippingNov 1980
- Towards Domain-invariant Carotid Artery Lumen-wall Segmentation Using Adversarial NetworksNov 1980
- Quantitative and Volumetric Assessment of a Deep Cascade Network for MR Reconstruction Under Different Acceleration FactorsNov 1980
- Enhanced Deep-learning-based Magnetic Resonance Image Reconstruction using Subjects’ Previous ScansNov 1980
- Calgary-Campinas raw k-space dataset: a benchmark for brain magnetic resonance image reconstructionNov 1980
- Reduction of J-difference Edited Magnetic Resonance Spectroscopy Acquisition Times Using Deep LearningNov 1980
- Automatic Vascular Function Estimation using Deep Learning for Dynamic Contrast-enhanced Magnetic Resonance ImagingNov 1980
- Maximal Max-Tree SimplificationNov 1980
- Frequency and Phase Correction of GABA-edited MR Spectroscopy using Complex-valued Convolutional Neural NetworkNov 1980
- Neonatal Brain MRI Motion Correction using Adult MRINov 1980
- Performance Metric for Assessment of Reconstructed Magnetic Resonance Image PhaseNov 1980
- Quality Assessment Tool using Deep Learning for GABA-Edited MRS dataNov 1980
- Coil Geometry Effects on Deep-learning-based MR Image ReconstructionNov 1980
- Artifact Simulation Toolbox for GABA-Edited Magnetic Resonance SpectroscopyNov 1980
- Acute ischemic stroke outcome prediction using deep learningIn Medical Imaging with Deep Learning, Nov 1980
- The Fountain of Youth: Augmenting Adult Data for Deep Learning-Based Neonatal Magnetic Resonance Imaging ReconstructionIn Medical Imaging with Deep Learning, Nov 1980